Publications

(last updated: September 2020)

 

Multiscale Imaging Approach for Studying the Central Nervous System: Methodology and Perspective

Michela Fratini, Ali Abdollahzadeh, Mauro DiNuzzo, Raimo A. Salo, Laura Maugeri, Alessia Cedola, Federico Giove, Olli Gröhn, Jussi Tohka, and Alejandra Sierra

Front Neurosci. 2020; 14: 72.

doi: 10.3389/fnins.2020.00072

 

Single-shot, high sensitivity X-ray phase contrast imaging system based on a Hartmann mask

Ombeline de La Rochefoucauld, Ginevra Begani Provinciali, Alessia Cedola, Mourad Idir, Guillaume Dovillaire, Fabrice Harms, Jérôme Legrand, Xavier Levecq, Francesca Mastropietro, Lionel Nicolas, Laura Oudjedi, Martin Piponnier,Philippe Zeitoun

10th Conference on Industrial Computed Tomography, Wels, Austria (iCT 2020), www.ict-conference.com/2020

 

High resolution 3D visualization of the spinal cord in a post-mortem murine model

Inna Bukreeva, Victor Asadchikov, Alexey Buzmakov, Marina Chukalina, Anastasya Ingacheva, Nikolay A. Korolev, Alberto Bravin, Alberto Mittone, Gabriele E. M. Biella, Alejandra Sierra, Francesco Brun, Lorenzo Massimi, Michela Fratini, and Alessia Cedola

Biomedical Optics Express, Vol. 11,Issue 4, pp. 2235-2253 (2020)

https://doi.org/10.1364/BOE.386837

 
X-ray phase contrast tomography for the investigation of amyotrophic lateral sclerosis

G. Begani Provinciali, N. Pieroni, I. Bukreeva, M. Fratini, L. Massimi, L. Maugeri, F. Palermo, F. Bardelli, A. Mittone, A. Bravin, G. Gigli, F. Gentile, A. Fossaghi, N. Riva, A. Quattrini and A. Cedola

J. Synchrotron Rad. (2020). 27, 1042-1048
https://doi.org/10.1107/S1600577520006785

 

Assessment of plaque morphology in Alzheimer’s mouse cerebellum using three-dimensional X-ray phase-based virtual histology

Lorenzo Massimi, Nicola Pieroni, Laura Maugeri, Michela Fratini, Francesco Brun, Inna Bukreeva, Giulia Santamaria, Valentina Medici, Tino Emanuele Poloni, Claudia Balducci &

Scientific Reports volume 10, Article number: 11233 (2020)

 
Multiscale pink-beam microCT imaging at the ESRF-ID17 biomedical beamline

A. Mittone, L. Fardin, F. Di Lillo, M. Fratini, H. Requardt, A. Mauro, R. A. Homs-Regojo, P.-A. Douissard, G. E. Barbone, J. Stroebel, M. Romano, L. Massimi, G. Begani-Provinciali, F. Palermo, S. Bayat, A. Cedola, P. Coan and A. Bravin

J. Synchrotron Rad. (2020). 27, 1347-1357
https://doi.org/10.1107/S160057752000911X

 

Brain Network Modularity During a Sustained Working-Memory Task

Marta Moraschi, Daniele Mascali, Silvia Tommasin, Tommaso Gili, Ibrahim Eid Hassan, Michela Fratini, Mauro DiNuzzo, Richard G. Wise, Silvia Mangia, Emiliano Macaluso, and Federico Giove

Front Physiol. 2020; 11: 422.

doi: 10.3389/fphys.2020.00422

 

Investigation of Herculaneum Papyri by X-Ray Phase-Contrast Tomography

Inna Bukreeva, Graziano Ranocchia, Vincenzo Formoso, Michele Alessandrelli, Michela Fratini, Lorenzo Massimi, Alessia Cedola

https://doi.org/10.1016/B978-0-12-813910-3.00013-6

 

Numerical simulation of the blood oxygenation level–dependent functional magnetic resonance signal using finite element method

F Mangini, M Di Nuzzo, L Maugeri, M Moraschi, D Mascali, A Cedola

International Journal for Numerical Methods in Biomedical Engineering 36 (2020)

https://doi.org/10.1002/cnm.3290

 

Orthotropic artifacts suppression for THz and x-ray images using guided filtering

V. Dolmatova, E. E. Berlovskaya, I. Bukreeva, A. Cedola, B. R. Islamov, E. Kuznetsova, I. A. Ozheredov, and D. P. Nikolaev

Proc. SPIE 11433, Twelfth International Conference on Machine Vision (ICMV 2019), 1143330 (31 January 2020);

https://doi.org/10.1117/12.2557499

 

Artifacts suppression in biomedical images using a guided filter

Bukreeva, A. Ingacheva, M. Fratini, A. Cedola, O. Junemann, E. Longo, F. Wilde, J. Moosmann, A. Buzmakov , Y. Krivonosov, D. Zolotov, S. Saveliev, V. Asadchikov and M. Chukalina

Proc. SPIE, Thirteenth International Conference on Machine Vision (ICMV 2020), accepted.

 

Iterative Reconstruction of Incomplete Tomography Data: Application Cases

Buzmakov, D. Zolotov, M. Chukalina, A. Ingacheva, V. Asadchikov, D. Nikolaev, Y. Krivonosov, I. Dyachkova, I. Bukreeva

Proc. SPIE, Thirteenth International Conference on Machine Vision (ICMV 2020).

 

Simultaneous iterative reconstruction method for high resolution x-ray phase contrast Tomography

I Bukreeva, V Asadchikov, A Buzmakov, M Chukalina, A Ingacheva

Twelfth International Conference on Machine Vision

(ICMV 2019) 11433, 114331V (2019)

 

Brain networks underlying eye’s pupil dynamics

M Di Nuzzo, D Mascali, M Moraschi, G Bussu, L Maugeri, F Mangini

Frontiers in Neuroscience 13, 965 (2019).

 

Ancient Greek text concealed on the back of unrolled papyrus revealed through shortwave-infrared hyperspectral imaging

Tournié, K. Fleischer, I. Bukreeva, F. Palermo, M. Perino, A. Cedola, C. Andraud, G. Ranocchia

Science Advances, Vol. 5, no. 10, eaav8936, 2019:

DOI: 10.1126/sciadv.aav8936

 

Mastrogiacomo, M., Campi, G., Cancedda, R., Cedola, A.

Synchrotron radiation techniques boost the research in bone tissue engineering

(2019) Acta Biomaterialia, 89, pp. 33-46.

DOI: 10.1016/j.actbio.2019.03.031

 

Exploring Alzheimer's disease mouse brain through X-ray phase contrast tomography: From the cell to the organ

Massimi, L., Bukreeva, I., Santamaria, G., Fratini, M., Corbelli, A., Brun, F., Fumagalli, S., Maugeri, L., Pacureanu, A., Cloetens, P., Pieroni, N., Fiordaliso, F., Forloni, G., Uccelli, A., Kerlero de Rosbo, N., Balducci, C., Cedola, A.

(2019) NeuroImage, 184, pp. 490-495.

DOI: 10.1016/j.neuroimage.2018.09.044

 

Stefanutti, E., Sierra, A., Miocchi, P., Massimi, L., Brun, F., Maugeri, L., Bukreeva, I., Nurmi, A., Provinciali, G.B., Tromba, G., Gröhn, O., Giove, F., Cedola, A., Fratini, M.

Assessment of the effects of different sample perfusion procedures on phase-contrast tomographic images of mouse spinal cord

(2018) Journal of Instrumentation, 13 (3), art. no. C03027.

DOI: 10.1088/1748-0221/13/03/C03027

 

Maugeri, L., Moraschi, M., Summers, P., Favilla, S., Mascali, D., Cedola, A., Porro, C.A., Giove, F., Fratini, M.

Assessing denoising strategies to increase signal to noise ratio in spinal cord and in brain cortical and subcortical regions

(2018) Journal of Instrumentation, 13 (2), art. no. C02028.

DOI: 10.1088/1748-0221/13/02/C02028

 

Massimi, L., Brun, F., Fratini, M., Bukreeva, I., Cedola, A.

An improved ring removal procedure for in-line x-ray phase contrast tomography

(2018) Physics in Medicine and Biology, 63 (4), art. no. 045007.

DOI: 10.1088/1361-6560/aaa706

 

Longo, E., Bravin, A., Brun, F., Bukreeva, I., Cedola, A., De La Rochefoucauld, O., Fratini, M., Le Guevel, X., Massimi, L., Sancey, L., Tillement, O., Zeitoun, P.

3D imaging of theranostic nanoparticles in mice organs by means of x-ray phase contrast tomography

(2018) Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 10573, art. no. 105734I.

DOI: 10.1117/12.2293090

 

Longo, E., Bravin, A., Brun, F., Bukreeva, I., Cedola, A., Fratini, M., Guevel, X.L., Massimi, L., Sancey, L., Tillement, O., Zeitoun, P., Rochefoucauld, O.D.L.

3D map of theranostic nanoparticles distribution in mice brain and liver by means of X-ray Phase Contrast Tomography

(2018) Journal of Instrumentation, 13 (1), art. no. C01049.

DOI: 10.1088/1748-0221/13/01/C01049

 

Brun, F., Massimi, L., Fratini, M., Dreossi, D., Billé, F., Accardo, A., Pugliese, R., Cedola, A.

SYRMEP Tomo Project: a graphical user interface for customizing CT reconstruction workflows

(2017) Advanced Structural and Chemical Imaging, 3 (1), art. no. 4.

DOI: 10.1186/s40679-016-0036-8

 

Cedola, A., Bravin, A., Bukreeva, I., Fratini, M., Pacureanu, A., Mittone, A., Massimi, L., Cloetens, P., Coan, P., Campi, G., Spanò, R., Brun, F., Grigoryev, V., Petrosino, V., Venturi, C., Mastrogiacomo, M., Kerlero De Rosbo, N., Uccelli, A.

X-Ray Phase Contrast Tomography Reveals Early Vascular Alterations and Neuronal Loss in a Multiple Sclerosis Model

(2017) Scientific Reports, 7 (1), art. no. 5890.

DOI: 10.1038/s41598-017-06251-7

 

Campi, G., Cristofaro, F., Pani, G., Fratini, M., Pascucci, B., Corsetto, P.A., Weinhausen, B., Cedola, A., Rizzo, A.M., Visai, L., Rea, G.

Heterogeneous and self-organizing mineralization of bone matrix promoted by hydroxyapatite nanoparticles

(2017) Nanoscale, 9 (44), pp. 17274-17283.

DOI: 10.1039/c7nr05013e

 

Bardelli, F., Veronesi, G., Capella, S., Bellis, D., Charlet, L., Cedola, A., Belluso, E.

New insights on the biomineralisation process developing in human lungs around inhaled asbestos fibres

(2017) Scientific Reports, 7, art. no. 44862.

DOI: 10.1038/srep44862

 

Bukreeva, I., Campi, G., Fratini, M., Spanò, R., Bucci, D., Battaglia, G., Giove, F., Bravin, A., Uccelli, A., Venturi, C., Mastrogiacomo, M., Cedola, A.

Quantitative 3D investigation of Neuronal network in mouse spinal cord model

(2017) Scientific Reports, 7, art. no. 41054.

DOI: 10.1038/srep41054

 

Massimi, L., Fratini, M., Bukreeva, I., Brun, F., Mittone, A., Campi, G., Spanò, R., Mastrogiacomo, M., de Rosbo, N.K., Bravin, A., Uccelli, A., Cedola, A.

Characterization of mouse spinal cord vascular network by means of synchrotron radiation X-ray phase contrast tomography

(2016) Physica Medica, 32 (12), pp. 1779-1784.

DOI: 10.1016/j.ejmp.2016.09.015

 

Bukreeva, I., Mittone, A., Bravin, A., Festa, G., Alessandrelli, M., Coan, P., Formoso, V., Agostino, R.G., Giocondo, M., Ciuchi, F., Fratini, M., Massimi, L., Lamarra, A., Andreani, C., Bartolino, R., Gigli, G., Ranocchia, G., Cedola, A.

Virtual unrolling and deciphering of Herculaneum papyri by X-ray phase-contrast tomography

(2016) Scientific Reports, 6, art. no. 27227, .

DOI: 10.1038/srep27227

 

Campi, G., Fratini, M., Bukreeva, I., Ciasca, G., Burghammer, M., Brun, F., Tromba, G., Mastrogiacomo, M., Cedola, A.

Imaging collagen packing dynamics during mineralization of engineered bone tissue

(2015) Acta Biomaterialia, 23, pp. 309-316.

DOI: 10.1016/j.actbio.2015.05.033

 

Bukreeva, I., Fratini, M., Campi, G., Pelliccia, D., Spanò, R., Tromba, G., Brun, F., Burghammer, M., Grilli, M., Cancedda, R., Cedola, A., Mastrogiacomo, M.

High-resolution X-ray techniques as new tool to investigate the 3D vascularization of engineered-bone tissue

(2015) Frontiers in Bioengineering and Biotechnology, 3 (SEP), art. no. 133, .

DOI: 10.3389/fbioe.2015.00133

 

Fratini, M., Campi, G., Bukreeva, I., Pelliccia, D., Burghammer, M., Tromba, G., Cancedda, R., Mastrogiacomo, M., Cedola, A.

X-ray micro-beam techniques and phase contrast tomography applied to biomaterials

(2014) Nuclear Instruments and Methods in Physics Research, Section B: Beam Interactions with Materials and Atoms, 364, pp. 93-97.

DOI: 10.1016/j.nimb.2015.06.023

 

Cedola, A., Campi, G., Pelliccia, D., Bukreeva, I., Fratini, M., Burghammer, M., Rigon, L., Arfelli, F., Chang Chen, R., Dreossi, D., Sodini, N., Mohammadi, S., Tromba, G., Cancedda, R., Mastrogiacomo, M.

Three dimensional visualization of engineered bone and soft tissue by combined x-ray micro-diffraction and phase contrast tomography

(2014) Physics in Medicine and Biology, 59 (1), pp. 189-201.

DOI: 10.1088/0031-9155/59/1/189

 

Fratini, M., Bukreeva, I., Campi, G., Brun, F., Tromba, G., Modregger, P., Bucci, D., Battaglia, G., Spanò, R., Mastrogiacomo, M., Requardt, H., Giove, F., Bravin, A., Cedola, A.

Simultaneous submicrometric 3D imaging of the micro-vascular network and the neuronal system in a mouse spinal cord

(2014) Scientific Reports, 5, art. no. 8514, .

DOI: 10.1038/srep08514

 

Campi, G., Pezzotti, G., Fratini, M., Ricci, A., Burghammer, M., Cancedda, R., Mastrogiacomo, M., Bukreeva, I., Cedola, A.

Imaging regenerating bone tissue based on neural networks applied to micro-diffraction measurements

(2013) Applied Physics Letters, 103 (25), art. no. 253703, .

DOI: 10.1063/1.4852056

 

Arfelli, F., Pelliccia, D., Cedola, A., Astolfo, A., Bukreeva, I., Cardarelli, P., Dreossi, D., Lagomarsino, S., Longo, R., Rigon, L., Sodini, N., Menk, R.H.

Recent developments on techniques for differential phase imaging at the medical beamline of ELETTRA

(2013) Journal of Instrumentation, 8 (6), art. no. C06001.

DOI: 10.1088/1748-0221/8/06/C06001

 

Ciasca, G., Businaro, L., De Ninno, A., Cedola, A., Notargiacomo, A., Campi, G., Papi, M., Ranieri, A., Carta, S., Giovine, E., Gerardino, A.

Wet sample confinement by superhydrophobic patterned surfaces for combined X-ray fluorescence and X-ray phase contrast imaging

(2013) Microelectronic Engineering, 111, pp. 304-309.

DOI: 10.1016/j.mee.2013.02.020

 

Guagliardi, A., Cedola, A., Giannini, C., Ladisa, M., Cervellino, A., Sorrentino, A., Lagomarsino, S., Cancedda, R., Mastrogiacomo, M.

Debye function analysis and 2D imaging of nanoscaled engineered bone

(2010) Biomaterials, 31 (32), pp. 8289-8298.

DOI: 10.1016/j.biomaterials.2010.07.051

 

Pelliccia, D., Sorrentino, A., Bukreeva, I., Cedola, A., Scarinci, F., Ilie, M., Gerardino, A.M., Fratini, M., Lagomarsino, S.

X-ray phase contrast microscopy at 300 nm resolution with laboratory sources

(2010) Optics Express, 18 (15), pp. 15998-16004.

DOI: 10.1364/OE.18.015998

 

Bonfigli, F., Almaviva, S., Cedola, A., Franzini, I., Lagomarsino, S., Pelliccia, D., Montereali, R.M.

Visible emitting color centers in lithium fluoride for X-ray imaging applications

(2010) Radiation Measurements, 45 (3-6), pp. 599-601.

DOI: 10.1016/j.radmeas.2009.09.011

 

Montereali, R.M., Almaviva, S., Bonfigli, F., Franzini, I., Pelliccia, D., Cedola, A., Lagomarsino, S.

F and F-aggregates colour centres in lithium fluoride for high spatial resolution x-ray imaging

(2010) Journal of Physics: Conference Series, 249, art. no. 012003, .

DOI: 10.1088/1742-6596/249/1/012003

 

Cedola, A., Bukreeva, I., Lagomarsino, S., Petrillo, V., Maroli, C.

Theoretical considerations for X-ray phase contrast mammography by Thomson source

(2009) Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 608 (1 SUPPL.), pp. S23-S27.

DOI: 10.1016/j.nima.2009.05.044

 

De Caro, L., Cedola, A., Giannini, C., Bukreeva, I., Lagomarsino, S.

In-line phase-contrast imaging for strong absorbing objects

(2008) Physics in Medicine and Biology, 53 (22), pp. 6619-6637.

DOI: 10.1088/0031-9155/53/22/021

 

De Caro, L., Giannini, C., Pelliccia, D., Mocuta, C., Metzger, T.H., Guagliardi, A., Cedola, A., Burkeeva, I., Lagomarsino, S.

In-line holography and coherent diffractive imaging with x-ray waveguides

(2008) Physical Review B - Condensed Matter and Materials Physics, 77 (8), art. no. 081408, .

DOI: 10.1103/PhysRevB.77.081408

 

Cancedda, R., Cedola, A., Giuliani, A., Komlev, V., Lagomarsino, S., Mastrogiacomo, M., Peyrin, F., Rustichelli, F.

Bulk and interface investigations of scaffolds and tissue-engineered bones by X-ray microtomography and X-ray microdiffraction

(2007) Biomaterials, 28 (15), pp. 2505-2524.

DOI: 10.1016/j.biomaterials.2007.01.022

 

De Caro, L., Giannini, C., Cedola, A., Pelliccia, D., Lagomarsino, S., Jark, W.

Phase retrieval in x-ray coherent Fresnel projection-geometry diffraction

(2007) Applied Physics Letters, 90 (4), art. no. 041105, .

DOI: 10.1063/1.2431457

 

Komlev, V.S., Peyrin, F., Mastrogiacomo, M., Cedola, A., Papadimitropoulos, A., Rustichelli, F., Cancedda, R.

Kinetics of in vivo bone deposition by bone marrow stromal cells into porous calcium phosphate scaffolds: An X-ray computed microtomography study

(2006) Tissue Engineering, 12 (12), pp. 3449-3458.

DOI: 10.1089/ten.2006.12.3449

 

Mastrogiacomo, M., Komlev, V.S., Hausard, M., Peyrin, F., Turquier, F., Casari, S., Cedola, A., Rustichelli, F., Cancedda, R.

Synchrotron radiation microtomography of bone engineered from bone marrow stromal cells

(2004) Tissue Engineering, 10 (11-12), pp. 1767-1774.

DOI: 10.1089/ten.2004.10.1767